Publications

2012

Efficient cross-validation for kernelized least-squares regression with sparse basis expansions. Pahikkala, Tapio; Suominen, Hanna; Boburg, Jorma. In Machine Learning, July.

Innovating health: can living labs succeed? Planitz, Birgit; Hanlen, Leif; Suominen, Hanna. In Health Informatics Conference 2012, July

NICTA eHealth initiatives on clinical speech and text processing. Suominen, Hanna; Martinez, David; Wu, Mike; Ananda-Rajah, Michelle; Cavedon, Lawrence. In Australia’s Health Informatics Conference, July.

Detecting modification of biomedical events using a deep parsing approach. MacKinlay, Andrew; Martinez, David; Baldwin, Tim. In BMC Medical Informatics and Decision Making, April.

Compression of RDF dictionaries. Martinez-Prieto, M; Fernandez, J; Canovas, R. In 27th Symposium on Applied Computing, March.

Search for medical records: NICTA at TREC 2011 medical track. Karimi, Sarvnaz; Martinez, David; Ghodke, Sumukh; Zhang, Lumin; Suominen, Hanna; Cavedon, Lawrence. In Text Retrieval Conference, January.

Clinical speech to text: evaluation setting. Suominen, Hanna; Basilakis, Jim; Johnson, Maree; Dawson, Linda; Hanlen, Leif; Kelly, Barbara; Yeo, Anthony; Sanchez, Paula. In CLEFeHealth 2012

RESTful health by opening confidential data and learning from hackers. Suominen, Hanna; Zhu, Liming; Reid, Mark; Hanlen, Leif. In Science.

Towards ease of building legos in assessing eHealth language technologies: a RESTful virtual laboratory for integrating and sharing data, resources and software. Suominen, Hanna; Kreiner, Karl; Wu, Mike; Hanlen, Leif. In CLEFeHealth 2012

Biosurveillance for invasive fungal infections via text mining. Martinez, David; Suominen, Hanna; ANANDA-Rajah, Michelle; Cavedon, Lawrence. In CLEFeHealth 2012

Querying RDF Dictionaries in Compressed Space. Martinez-Prieto, Miguel; Fernandez, Javier; Canovas, Rodrigo. In Applied Computing Review.

Prerequisites for the establishment of an international privacy-preserving environment for health information dissemination. Suominen, Hanna; Muller, Henning; Ohno-Machado, Lucila; Salantera, Sanna; Schreier, Gunter. In Journal of the America Medical Informatics Association.  

2011

Using speech-to-text (STT) technology in nursing health communication. Johnson, Maree; Suominen, Hanna; Hanlen, Leif; Dawson, Linda; Basilakis, Jim; Yeo, Anthony; Overs, Bronwyn. In Researching Communication at UWS: Brain, Behaviour and Computation, December.

Drug Side-effects: what do patient forums reveal? Karimi, Sarvnaz; Kim, Su Nam; Cavedon, Lawrence. In The Second International Workshop on Web Science and Information Exchange in the Medical Web, October.

A parser-based approach to detecting modification of biomedical events. MacKinlay, Andrew; Martinez, David; Baldwin, Timothy. In ACM Fifth International Workshop on Data and Text Mining in Biomedical Informatics, October.

Text mining in a hospital setting: information extraction from pathology reports. Martinez, David; Li, Yue. In ACM International Conference on Information and Knowledge, October.

Machine Intelligence for health information: capturing concepts and trends in social media via query expansion. Su, Xing-Yu (Frank); Suominen, Hanna; Hanlen, Leif. In Health Informatics Conference 2011, August.

Characteristics of Finnish and Swedish intensive care nursing narratives: a comparative analysis to support the development of clinical language technologies. Allvin, Helen; Carlsson, Elin; Dalianis, Hercules; Danielsson-Ojala, Riitta; Daudaravicius, Vidas; Hassel, Martin; Kokkinakis, Dimitrios; Lundgren-Laine, Helja; Nilsson, Gunnar; Nytro, Oystein; Salantera, Sanna; Skeppstedt, Maria; Suominen, Hanna; Velupillai, Sumithra. In Journal of Biomedical Semantics, August.

Crisis management: using Twitter and Facebook for the greater good. Suominen, Hanna. In Conversation, July.

Telehealth infrastructure services. Hanlen, Leif; Carden, Michelle. In NICTA Technical report, July.

Improving MeSH classification of biomedical articles using citation contexts. Aljaber, Bader; Martinez, David; Stokes, Nicola; Bailey, James. In Journal of Biomedical Informatics, June.

Making sense of health records: review and roadmap in the context of Australia and Nordic countries. Suominen, Hanna; Hanlen, Leif; Lundgren-Laine, Helja. In Journal of Healthcare Engineering, June.

Supporting communication and decision making in Finnish intensive care with language technology. Suominen, Hanna; Salakoski, Tapio. In Advances in Critical Care Engineering, May.

Word sense disambiguation for event trigger word detection in biomedicine. Martinez, David; Baldwin, Tim. In BMC Bioinformatics, March.

Automatic classification of sentences to support evidence based medicine. Kim, Su Nam; Martinez, David; Cavedon; Yencken, Lars. In BMC Bioinformatics, March

Bottlenecks in a flow of patient information and a schematic framework of supporting technologies: qualitative and quantitative analysis of patient records from intensive care. Suominen, Hanna; Lundgren-Laine, Helja; Salantera, Sanna; Hanlen, Leif; Forsstrom, Jari; Perttila, Juha; Karsten, Helena; Salakoski, Tapio. In International Journal of Nursing Studies. 

2010

Supporting communication and decision making in Finnish intensive care with language technology. Suominen, Hanna; Salakoski, Tapio. In Journal of Healthcare Engineering, November.

Tele-health and pervasive broadband Australian and international experience. Hanlen, Leif. In Global Telehealth, November.

NBN + ehealth: an entrance examination. Hanlen, Leif. In Australian Telecommunication Users Group, November.

Automatic classification of sentences for evidence based medicine. Kim, Su Nam; Martinez, David; Cavedon, Lawrence. In ACM Fourth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO), October.

Boolean versus ranked querying for biomedical systematic reviews. Karimi, Sarvnaz; Pohl, Stefan; Scholar, Falk; Cavedon, Lawrence; Zobel, Justin. In BMC Medical Informatics and Decision Making, October.

Classifying dialogue acts in one-on-one live chats. Kim, S; Cavedon, L; Baldwin, T. In 2010 Conference on Empirical Methods in Natural Language Processing, October.

Word sense disambiguation for event trigger word detection. Martinez, David; Baldwin, Tim. In ACM Fourth International Workshop on Data and Text Mining in Biomedical Informatics, October.

Visualizing document collections and search results using topic mapping. Newman, David; Baldwin, Tim; Cavedon, Lawrence; Karimi, Sarvnez; Martinez, David; Zobel, Justin. In Journal of Web Semantics, August.

Chart mining-based lexical acquisition with precision grammars. Zhang, Yi; Baldwin, Tim; Kordoni, Valia; Martinez, David; Nicholson, Jeremy. In Human Language Technologies: The 11th Annual Conference of the North American Chapter of the Association for Computational Linguistics, June.

Intelligent linux information access by data mining: the ILIAD project. Baldwin, T; Martinez, D; Penman, R; Kim, SN; Liu, M; Wang, L., MacKinlay, A. In NAACL 2010 Workshop on Computational Linguistics in a World of Social Media, June.

Telemedicine in the context of the National Broadband Network. Hanlen, Leif; Robertson, Phil. In NICTA Technical Report, June.

Characteristics and analysis of Finnish and Swedish clinical intensive care nursing narratives. Allvin, Helen; Carlsson, Elin; Dalianis, Hercules; Danielsson-Ojala, Riitta; Daudaravicius, Vidas; Hassel, Martin; Kokkinakis, Dimitrios; Lundgren-Laine, Helja; Nilsson, Gunnar; Nytro, Oystein; Salantera, Sanna; Skeppstedt, Maria; Suominen, Hanna; Velupillai, Sumithra. In Second LOUHI Workshop on Text and Data Mining of Health Documents, June.

Visualizing search results and document collections using topic maps. Newman, David; Baldwin, Tim; Cavedon, Lawrence; Huang, Eric; Karimi, Sarvnez; Martinez, David; Scholer, Falk; Zobel, Justin. In Journal of Web Semantics, April.

A re-examination of MRD-based word sense disambiguation. Baldwin, Timothy; Kim, Su Nam; Bond, Francis; Fujita, Sanae; Martinez, David. In ACM Transactions on Asian Language Information Processing, March.

Information extraction of multiple categories from pathology reports. Li, Yue; Martinez, David. In 2010 Australasian Language Technology Workshop.

2009

External evaluation of topic models. Newman, David; Karimi, Sarvnaz; Cavedon, Lawrence. In Australasian Document Computing Symposium, December.

Topic models to interpret MeSH – MEDLINE’s medical subject headings. Newman, David; Karimi, Sarvnez; Cavedon, Lawrence. In Australasian Joint Conference on Artificial Intelligence, December.

Extraction of named entities from tables in gene mutation literature. Wong, Wern; Martinez, David; Cavedon, Lawrence. In BioNLP Workshop at NAACL-HLT, June.

Biomedical event annotation with CRFS and precision grammars. MacKinlay, Andrew; Martinez, David; Baldwin, Tim. In BioNLP 2009 Workshop Companion Volume for Shared Task, June.

Exploring criteria for successful query expansion in the genomic domain. Stokes, Nicola; Li, Yi; Cavedon, Lawrence; Zobel, Justin. In Information Retrieval, February.

2008

Extraction of named entities from tables in gene mutation literature. Wong, Wern; Martinez, David; Cavedon, Lawrence. In 13th Australasian Document Computing Symposium, December.

Facilitating Biomedical systematic reviews using ranked text retrieval and classification. Martinez, David; Karimi, Sarvnaz; Cavedon, Lawrence; Baldwin, Tim. In 13th Australian Document Computing Symposium, December.

Facilitating biomedical systematic reviews using text classification and ranked text retrieval. Martinez, David; Karimi, Sarvnaz; Cavedon, Lawrence; Baldwin, Tim.  In Australasian Document Computing Symposium, December.

Estimating workload and effort based on wearable sensors. Hanlen, Leif. NICTA Technical Report, August

2007

Exploring extensions to machine learning-based gene normalisation. Goudey, Benjamin; Stokes, Nicola; Martinez, David. In Australasian Language Technology Workshop, December.

Exploring abbreviation expansion for genomic information retrieval. Stokes, Nicola; Cavedon, Lawrence; Zobel, Justin. In Australasian Language Technology Workshop, December.

2006

Proceedings of the 2006 Australasian language technology workshop. Cavedon, L; Zukerman, I. In Australasian Language Technology Workshop, November.

Robust interpretation in dialogue by combining confidence scores with contextual features. Purver, M; Ratiu, F; Cavedon, L. In 9th International Conference on Spoken Language Processing, September.

CHAT: A conversational helper for automotive tasks. Weng, F; Varges, S; Raghunathan, B; Ratiu, F; Pon-Berry, H; Lathrop, B; Zhang, Q; Scheideck, T; Bratt, H; Xu, K; Purver, M; Mishra, R; Raya, M; Peters, S; Meng, Y; Cavedon, L; Shriberg, L. In 9th International Conference on Spoken Language Processing, September.  

Exploring probabilistic toponym resolution for geographical information retrieval. Li, Y; Moffat, A; Stokes, N; Cavedon, L. In SIGIR Workshop on Geographical Information Retrieval, August.