Projects

Software Projects People Publications Videos

Genome-wide association studies

Genome-wide interaction studies
Collaborators: John Hopper, Mike Inouye
NICTA researchers: Adam Kowalczyk, Izhak Haviv, Ben Goudey, Eder Kikianty, Armita Zarnegar, John Markham, Fan Shi, Qiao Wang, Gad Abraham, Geoff Macintyre
Software: GWIS

Transcriptional regulation

Looking at the role of RAR/RXR in embryonal carcinoma
Collaborators: Gerard Benoit, Justin Bedo, Florence d'Alché-Buc
NICTA researchers: Adam Kowalczyk, Izhak Haviv, Geoff Macintyre, Qiao Wang
Software: SCRM
Looking at the role of AR in prostate cancer
Collaborators: Gerard Coetzee, Chris Hovens, Matthew Hong, Naeem Amiry
NICTA researchers: Adam Kowalczyk, Izhak Haviv, Geoff Macintyre
Software: is-rSNP
ChIP-SEQ analysis of Fra1 & POLI
Collaborators: Ross Hannan
NICTA researchers:
Izhak Haviv
Interplay among multiple histone modifying enzymes in the metastatic response to HDAC inhibitors
Intergrating ChIP-SEQ and RNA-SEQ data
Collaborators:Sam El-Osta, Sebastian Lunke, Aneta Bracelczyk, Antoni Kaspi
NICTA researchers:
Izhak Haviv
Epigenetic changes in breast epithelial stem cells in response to parity and associated breast cancer risk
Collaborators: Kornelia Polyak, Sibgat Rouchouduri, Reo Maruyama, Saraswami Sukamar
NICTA researchers:
Izhak Haviv, Adam Kowalczyk, Thomas Conway, Bryan Beresford-Smith

Next-generation sequencing

MeDIP-Seq for DCIS
Collaborators:Steven Fox, Alex Dobovic, Richard Tothill
NICTA researchers:
Izhak Haviv, Adam Kowalczyk, Thomas Conway, Bryan Beresford-Smith
Trial matcher and PathFinder
Collaborators:Paul Waring, Fernando Martin Sanchez, Jayesh Desai
NICTA researchers:
Izhak Haviv, Justin Zobel
Clozapine-MHC genotyping
Collaborators:Kathlyn Ronaldson
NICTA researchers:
Izhak Haviv
AR and castration resistance
Collaborators:Liz Williams
NICTA researchers:
Izhak Haviv, Thomas Conway, Bryan Beresford-Smith
Genome and transcriptome de novo assembly algorithms and their use in finding biologically relevant information in next generation sequencing
NICTA researchers: Bryan Beresford-Smith, Thomas Conway, Jeremy Wazny, Andrew Bromage, Justin Zobel
Software: Gossamer
Compression Techniques for Large Genomic Databases
NICTA researchers: Justin Zobel, Shanika Kuruppu
Software: RLZ
Error correction and data quality for short-read genomic data.
NICTA researchers: Justin Zobel, James Bailey, Jan Schroeder
Software: Quarc

Metabolomics

eQTL GWAS analysis of lipid levels in the blood
Collaborators: Jeremy Jowett, John Blangero
NICTA researchers: Izhak Haviv, Adam Kowalczyk, Gerard Wong

Network analysis

Network analysis tools to assist the interpretation of molecular classification biomarkers in cancer
NICTA researchers: Izhak Haviv, James Bailey, Peter Stuckey